There seems to be some confusion here.
First of all, rel="publisher" is a way to connect your site to your page on Google+. This can help your page be recognized as the "official" page for your brand and make it eligible for Google Direct Connect. The rel="publisher" tag goes ONLY on your homepage. rel="publisher" will NOT get your company logo shown in the search results (at least not yet).
rel="author" is a way to link the content on your site to specific authors on Google+. This has the benefit of building up the author rank for those authors, as well as displaying author snippets in the search results. This only works with photos of people, not cartoons or logos. The author tag should go on every page where you have unique content.
This link shows you the different ways you can verify ownership:
http://support.google.com/webmasters/bin/answer.py?hl=en&answer=1408986
Hope that helps!
