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We do have a known issue (http://health.moz.com/) that rankings are missing for some accounts. We are pushing out a fix for this. I'm not sure of the timeframe for the fix, but do know that it's not you, we're the ones who have messed up and it'll be fixed soon.

Andrew thank you for your response.  Our next hurdle is that they are wanting to leave the .net up while the .com is also up.  Two different designs, similar if not the same content on every page.  I'm pushing for internal IP only testing then launch in the middle of the night so we can roll back if there are issues.  I mean with thorough testing there shouldn't be but I know anything is possible.

Hey guys thanks again for the help but I am still looking for some data to prove this point.  I have gone ahead and determined that the keywords we are currently using are placing us page 4 and below while our title tags are placing us higher.  If there are any other articles are hard facts on how this doesn't help in this scenario it would be greatly appreciate.

Hello! The rankings update are on a weekly cycle so when you add new keywords it can take 1 or 2 cycles depending on when they were added. For example if your rankings are collected on Mondays and you add new keywords on that same Monday or Tuesday, they will appear in the next collection cycle the following Monday. If you add them on a Friday or within 72 hours, you may miss the update and they will be delayed another week. The earlier you can add keywords, the better. While waiting you can request an instant report through ranktracker.moz.com Hope this helps!