In that case, I would not sweat over it. If you think about it, companies can't control who links to them. Imagine all those Wordpress, Blogspot Blogs, which have a sitewide blogroll. If a mommy blogger created a blog 5 years ago and linked to Disney.com for example, and now she does not even remember that she created a blog...what can Disney.com do about it and they are all from username.wordpress.com kind of URLs, so all from the same IP.
Anyways, long story short, all kinds of links...add up to become a natural link profile. For Web Design companies, this is fairly common in my opinion and good news is that you are using brand as a keyword, so I don't think there's something to be worried about. Going forward, if I were you, I would nofollow the links. But leave the old ones as is unless there's an issue in which case you could add nofollow to those existing links as well.