Whether or not you get penalised or banned from social bookmarking sites will depend on how you use the automated software. Many social bookmarking sites state in their terms and conditions that you're not allowed to automate the submission of links. Others don't state that, but still reserve the right to ban accounts they feel are a misuse of their service.
In terms of whether search engines will penaise your sites - I think it depends on how many other valuable incoming links you already have. If all your links come from social bookmarking sites you're not likely to see much of a boost to SERP rankings.