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Thank you Tom. We were unaware of the bug within G. Guess that answers it. So, a follow up question, if I may? We, and I have seen others, have submitted multiple versions of the disavow file. Unless we keep absolute track of these links and domains there is no way to know if the links are indexed and hurting us? If we have a domain that has been disavowed, but still shows in GWT, how can we tell if it is in index for our site? Thanks again.

Thanks Dan, I was really hoping of just a general checklist for any industry any blog. For instance, once a post gets published, the author should: Promote their post on G+ and FB, and our company Twitter account. Add the page to their del.icio.us account. Other "bookmark" sites. Connect with Top 10 "blogger friends" and let them know the post is up. Promote on reddit. Do a couple of general searches around the web and see if any other blog posts would benefit from the content you just posted. etc. etc. We could take this list, clean it up, and boom, might have a pretty darn good publishing/promoting list or infografic for aspiring seo professionals....

Our tags are a little more specific, but I can't see what value they are adding to our site users and thus this seems to be a great solution. Thank you.

Thank you Mark. Wow, what a comprehensive response. I appreciate it. I have also found some more info doing further research. http://www.seomoz.org/blog/should-i-change-my-urls-for-seo I will continue to post info here as I find it.