Each subdomain may have its own robots.txt file. So for that subdomain, you can put:
User-agent: *
Disallow: /
In the robots.txt, and that should do it.
Please note that disallowing pages in robots.txt will not necessarily mean they won't appear on search result pages.... if people link to pages that are disallowed on that subdomain, they can still appear in SERPs. I had this happen with a few pages, which leads to funny listings in the SERPs because Google has to guess what the page title and description of the page should be, since it's not allowed to read the page. The meta noindex tag is the way to go if you want to be really sure the page doesn't appear in the SERPs. If you use that, don't disallow the page. Here's a recent SEOMoz post about it: http://www.seomoz.org/blog/robot-access-indexation-restriction-techniques-avoiding-conflicts