"So instead I took some advice and changed them to 200, but with a "noindex" meta tag and set them to not render any content. I get less errors but I now have a lot of pages that do this."
I would not recommend keeping it that way. You could mass redirect them to the sitemap page if they are passing PR and or some traffic, and there is no logical other place to point them.
404's are not really something that can hurt you, providing that they are coming from external sources and you aren't providing 404 links on your site to dead pages on your site, if there are these, then you should fix the internal links at the source.