We are no experts on Affiliate marketing/linking, however, we have been working to implement best practices when doing so. Maybe not on the scale you want, but nonetheless, still working to gather and distribute affiliate links.
Per the Google not "counting footer links", that would be false. Google counts ALL links, so be careful nothing is being stuffed. Look to structure your content and pages in order to present an organized link setup. Most affiliates we are researching use a number of styles, ie: logos, graphics, call to action buttons, full written reviews of a product with affiliate hyperlinks, product/service pages with 100% unique content to differ from the source.
We are still researching all of this and continue to learn new tricks, read more articles, listen to podcasts, watch videos, etc... so you're on the right track. Scratch their back and they will scratch yours, just always be mindful of Google's updates and best practices so not to get penalized.
Patrick
