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Thank You! The site in question had the same malicious scripts detailed here. After finding them and removing them the site is up and running as it should thanks again for the advice.

Thank You for the further explanation, since i posted my question things have definatley updated to reflect many of the most recent links we have created. But for some time there it did seem as if everything was frozen only the same links would appear and after posting my question even my domain authority jumped 3 points over night. Thanks again as it looks like my campaign stats are back on track.