See your sites Architecture

[ScottBaxterWW]

Does anybody know a problem where you can see how your internal linkings look to the search engines?

[Sebes]

There is a new German based service called strucr.com which does exactly this: analyzing large sites and their internal linkstructure. But it is mostly for realy large sites.

Other options you have is to use xenu link sleuth and crawl your site by yourself.