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The "good" links we disavowed earlier are ranking well on Google. Most are from high quality sites related to the same niche. The issue was, the reconsideration request got rejected the twice. The example links mentioned in the response were all created by our site visitors. We were in now way responsible for the links placed on those pages. The pages were from BlogSpot, Wordpress and some really popular forums with content created by the users. But we had to disavow those as well and similar pages to get the penalty revoked. We never checked the page quality and authority that time. We checked later when the traffic dropped and found a lot of pages to be good.