Question #2: All of my INTERNAL links in OSE are being indexed from http://www.e.com/default.asp, and all my EXTERNAL links are linked to http://www.e.com/ am I getting a fraction of the link juice because of that?????

[TylerAbernethy]

Hey guys, sorry for the really long question, but it appears that I am losing between 50 and 75 % of my link juice to my internal pages.

In OSE all main category links (left sidebar) are being indexed from the URL that includes default.asp, even though NONE of my external links include that:

http://www.opensiteexplorer.org/links?site=http%3A%2F%2Fwww.uncommonthread.com%2FSulky-Thread-s%2F78.htm

If you check the PA for http://www.uncommonthread.com/:

http://www.opensiteexplorer.org/links?site=http%3A%2F%2Fwww.uncommonthread.com%2F

You see that it is practically double the PA of http://www.uncommonthread.com/default.asp:

http://www.opensiteexplorer.org/links?site=http%3A%2F%2Fwww.uncommonthread.com%2FDefault.asp

**Also, non of my internal menu links are being indexed. **

Look at the menu on this page:

http://www.uncommonthread.com/Sulky-Thread-s/78.htm

and then look at the OSE information here for the "invisible thread" item from the menu on the page above^^^:

http://www.opensiteexplorer.org/links?site=http%3A%2F%2Fwww.uncommonthread.com%2FSulky-monofilament-s%2F54.htm

Thanks SOOO much!

Pre-thumbs and thanks to anyone that can lend me a seconds worth of advice!

Thanks again for your time,

Tyler A.

[RobertFisher]

Tyler,

Without digging too deeply, I have a couple of suggestions to help you in the overall. 
First, I cannot find a 'canonical redirect' and it appears you have not set a preferred domain in WMT. When you go into OSE, typically you will see something like: "this url redirects to x and we are showing that as it is more representative... " When you have done the preferred domain and/or canonical redirect you are telling the engines that the domain: mysiteexample.com and the sub domain www.mysiteexample.com should be seen as one in the same. That will help a lot with what you have here.

On your internal links, go into GWMT and click on Traffic. Your dropdown will include internal links. That will show these to you. (Note that you likely will show both www and non in WMT. If you click on one and go to internal and it says no data available... go to the other.

For preferred in case you are unfamiliar, click on Configuration, Settings, Preferred Domain

Choose which you want and boogie on...

Hope it helps,

Robert